Products

From the Research Coordinated Network for Evolution in Changing Seas

Websites

MarineOmics. This dynamic website features advice and pipelines for genomic data analysis. It is a living document and contributions are always welcome!

Bioinformatics for Marine Science This website features an introductory course in ecological bioinformatics, using kelp and urchin data.

Temporal Genomics This website features talks and resources for conducting temporal genomic studies.

Peer-reviewed Publications

2024

Lotterhos KE✝, Bernal MA✝, Phifer-Rixey M✝, Hanley T✝. Lighting pathways to success in STEM: A virtual Lab Meeting Program (LaMP) mutually benefits mentees and host labs. Proceedings of the Royal Society B: Biological Sciences. A Biological Practices Paper.

2023

Bogan S, Johns J, Griffiths J, Davenport D, Smith S, Schaal S, Downey-Wall A, Lou N, Lotterhos KE, Guidry M, Rivera H, McGirr J, Puritz JB, Roberts S, Silliman K. 2023. A dynamic web resource for robust and reproducible genomics in nonmodel species: marineomics.io. Methods in Ecology and Evolution 14:2709-2716.

Eric D. Crandall, Rachel H. Toczydlowski, Libby Liggins, Ann E. Holmes, Maryam Ghoojaei, Michelle R. Gaither, Briana E. Wham, Andrea L. Pritt, Cory Noble, Tanner J. Anderson, Randi L. Barton, Justin T. Berg, Sofia G. Beskid, Alonso Delgado, Emily Farrell, Nan Himmelsbach, Samantha R. Queeno, Thienthanh Trinh, Courtney Weyand, Andrew Bentley, John Deck, Cynthia Riginos, Gideon S. Bradburd, Robert J. Toonen. Importance of timely metadata curation to the global surveillance of genetic diversity Conservation Biology, 2023.

René D. Clark, Katrina A. Catalano, Kyra S. Fitz, Eric Garcia, Kyle E. Jaynes, Brendan N. Reid, Allyson Sawkins, Anthony A. Snead, John C. Whalen, Malin L. Pinsky. 2023. The practice and promise of temporal genomics for measuring evolutionary responses to global change. Molecular Ecology Resources

Alli N. Cramer, Jennifer A. Hoey, Tara E. Dolan, Remy Gatins, Jason A. Toy, Jordan L. Chancellor, Eric P. Palkovacs, John Carlos Garza and Roxanne S. Beltran. 2023. A unifying framework for understanding ecological and evolutionary population connectivity. Frontiers in Ecology and Evolution.

2022

Sasaki, M., J.M. Barley, S. Gignoux-Wolfsohn, C.G. Hays, M.W. Kelly, A.B. Putnam, S. N. Sheeth, A.R. Villeneuve, B.S. Cheng. 2022. Greater evolutionary divergence of thermal limits within marine than terrestrial species. Nature Climate Change 12:1175-1180

Sasaki, M. and B.S. Cheng. 2022. Populations adapt more to temperature in the ocean than on land. Nature Climate Change 12: 1098-1099. Research Briefing

Molly Albecker, Geoffrey C. Trussell, Katie E. Lotterhos. 2022. A novel analytical framework to quantify co-gradient and countergradient variation Ecology Letters.

2021

Rachel H. Toczydlowski, Libby Liggins, Michelle R. Gaither, Tanner J. Anderson, Randi L. Barton, Justin T. Berg, Sofia G. Beskid, Beth Davis, Alonso Delgado, Emily Farrell, Maryam Ghoojaei, Nan Himmelsbach, Ann E. Holmes, Samantha R. Queeno, Thienthanh Trinh, Courtney A. Weyand, Gideon S. Bradburd, Cynthia Riginos, Robert J. Toonen, and Eric D. Crandall. 2021. Poor data stewardship will hinder global genetic diversity surveillance. PNAS 118, e2107934118

2021 (Special Feature in Proceedings of the Royal Society B)

Molly A. Albecker†, Laetitia G. E. Wilkins†, Stacy A. Krueger-Hadfield, Samuel M. Bashevkin, Matthew W. Hahn, Matthew P. Hare, Holly K. Kindsvater, Mary A. Sewell, Katie E. Lotterhos and Adam M. Reitzel. 2021. Does a complex life cycle affect adaptation to environmental change? Genome-informed insights for characterizing selection across complex life cycle Proceedings of the Royal Society B

M. C. Bitter, J. M. Wong, H. G. Dam, S. C. Donelan, C. D. Kenkel, L. M. Komoroske, K. J. Nickols, E. B. Rivest, S. Salinas, S. C. Burgess and K. E. Lotterhos. 2021. Fluctuating selection and global change: a synthesis and review on disentangling the roles of climate amplitude, predictability and novelty Published 2021 in Proceedings of the Royal Society B

Jordanna M. Barley, Brian S. Cheng, Matthew Sasaki, Sarah Gignoux-Wolfsohn, Cynthia G. Hays, Alysha B. Putnam, Seema Sheth, Andrew R. Villeneuve and Morgan Kelly. 2021. Limited plasticity in thermally tolerant ectotherm populations: evidence for a trade-off Proceedings of the Royal Society B

Amanda Xuereb, Quentin Rougemont, Peter Tiffin, Huijie Xue and Megan Phifer-Rixey. 2021. Individual-based eco-evolutionary models for understanding adaptation in changing seas Proceedings of the Royal Society B

Katie E. Lotterhos, Molly Albecker and Geoffrey C. Trussell. 2021. Evolution in Changing Seas Proceedings of the Royal Society B